Server: http://bipad.cmh.edu

User guide: web-bipad manual [download PDF]

WEB BIPAD INPUT:

• Why your email address is needed?
• What is your password?
• Name your project
• What is a bipartite search pattern?
• What is an alignment mode?
• Cycles of bipad run
• FASTA input sequence
• Sequence Model: OOPS or ZOOPS?
• How many motif flanking bases?
• What are output/result options?

WEB BIPAD OUTPUT (example: CRP binding sites)

• How is output sent: via email or online?
• How to download your results and input sequence?
• What is a sequence logo: one-block or bipartite?
• What is a gap histogram?
• What is a motif table?
• A sample sequence: (CRP binding sites)
• Typical bipad output (text)